f|*.trm
Defined in file: brainvisa/types/builtin.py
01. Prepare grey and white maps for DARTEL
02. DARTEL Template Creation
3DFFDTransformationApplication
3DFFDTransformationEstimation
[Volume] Block Matching
[Volume] Resample
AddScannerBasedReferential
Align and Resample
Anat To FreeSurfer Meshes Transformation
Anatomist Check Register
Anatomist Show 3D Activations
Anatomist Show Descriptive Model
Anatomist Show Registration
Anatomist view connectivity
Anatomist view mozaic visualization of fibers
Anatomy Normalization (using AimsMIRegister)
Apply A Transformation To a White Mesh
Apply direct or inverse Transformation
Apply FFD on atlas label
Apply multiple deformations
Apply Transformation
ApplyTransformationInReferential
Atlas Registration: Affine (MI/Newton)
Atlas Registration: Application
Atlas Registration: Non Linear (MI/FFD)
Baladin Normalization Pipeline
Baladin Normalization to AIMS converter
Block matching transformation estimation
Border generation
Brain Tracts Filtering
Brain Tracts Filtering - MRtrix
Brainvisa Show Transformation Matrix
Change Template Referential
Check raw data pipeline (PET)
Cingular Pole Projection
compare two transformations
Compose 2 transformations
Compute Cortical Fold Graph Upgrade From Old
Compute GTM PVC based methods
Constellation Individual Clusters from atlas pipeline - MRtrix
Constellation Individual Pipeline - Connectomist
Constellation Individual Pipeline - MRtrix
Conversion of meshes to aims referential
Copy data between databases
Copy Referential
Cortical Fold Graph (3.1+)
Cortical Fold Graph (general)
Cortical Fold Graph (one hemisphere)
Cortical Fold Graph 2007-2011 (general)
Cortical Fold Graph Upgrade Structure
Cortical Folds Graph
Create DISCO deformation field from subjectA to subjectB
Create DISCO+DARTEL deformation field from subjectA to subjectB
Create Sulcus Label Volume
DICE calculation : FFD on label with different knot grid
DICE calculation : FFD on label with different knot grid positions
DICE calculation : transformations evaluation
DigitalAtlasRegistrationOnVolume
DigitalAtlasRegistrationOnVolumeParallel
EXPERIMENTAL: Compute template descaling transformation
Extract clusters
extract raw transformation from headers
Free form deformation registration pipeline
Free form deformation transformation estimation
FreeSurfer anatomy to Talairach transformation
FSL Normalization Pipeline
FSL Normalization to AIMS converter
FSL to AIMS transformation converter
GeneralImport
Graph Structure (3.1)
Graph To Talairach converter
Hemi Surfaces and Sulci Extraction
Hemisphere Cortical Folds Graph
Hoffman - Background Correction
Hoffman - Compute Coregistration and QC
Hoffman - Coregistration
Import FreeSurfer grey/white segmentation to Morphologist
Import FSL Connectomes.
Import Jaszczak pipeline
Import MCRIBS dHCP preterm subject into a brainvisa database
Import MNI CIVET Segmentation
ImportData
Intensity normalisation PET Pipeline (spm12)
Intensity normalisation PET Pipeline (spm8)
Interhemispheric plane correction
Linear registration pipeline
Localize Talairach Coordinate
Mesh deformation component
mni_from_talairach
morpho_report
Move volume between MNI - T1MRI - PET (spm12)
Move volume between MNI - T1MRI - PET (spm8)
Mutual information transformation estimation
New Referential
Normalization pipeline
Nuclear Imaging quality check
Optimal PET Amyloid Long (OPAL spm12)
pet pipeline using MRI (spm12)
pet pipeline using MRI (spm8)
PETScanAtlasAnalysis
Prepare Subject for Anatomical Pipeline
Preprocess for PET Pipeline using MRI (spm12)
Preprocess for PET Pipeline using MRI (spm8)
PVC pipeline
Quality check pipeline (SPECT)
Registration pipeline
Registration pipeline v2
Reorient Anatomy
Resample images into a Talairach-aligned grid
Resample ROI graph
Resample to Template Space
Resampling
Resampling volume
Right Insular Pole Projection
Rigid registration with mutual information
ROI based analysis PET Pipeline (spm12)
ROI based analysis PET Pipeline (spm8)
Segmentation of Corpus Callosum
set_image_normalization
Show Models With Sulci For Manual Labeling
Simplified Morphologist 2025
Skull-stripped brain normalization
SPAM recognition, global registration
SPAM recognition, local registration
SPAM recognition, Markovian model
Sparse Individual Matrices and Profiles From Tracts.
Sparse Individual Matrices and Profiles From Tracts.
Split ROI
SPM Normalization Pipeline
SPM quantification
SPM sn3d to AIMS transformation converter
SPM to AIMS transformation converter
spm12 - Coregister: Estimate & Reslice - generic
spm12 - Coregister: Estimate Only
spm12 - Coregister: Estimate Only - generic
spm12 - Deformations : composition - generic
spm8 - Coregister: Estimate & Reslice - generic
spm8 - Coregister: Estimate Only - generic
Talairach Transformation
Talairach transformation from manual AC/PC
Talairach Transformation From Normalization
Transform a commissures AC-PC coordinates
Transform fibre bundles between subjects
Transform fibre bundles into the common space
Transform graph between subjects
Transform graph into the common space
Transform mesh between subjects
Transform mesh into the common space
Transform volume between subjects
Transform volume into the common space
transform_between_subjects_pipeline
Transformation application
Transformation inverter
Validity Indexes
View in hippocampic referential
Write a different measures in csv file
{Viewer} Affine Registration
{Viewer} FFD Registration
4D Volume
Anatomy To Mean Functional Volume Transformation
Any Type
Compo To Resample To Talairach
CT to PET dynamic transformation file
CT to PET transformation file
CT_to_PETDyn
CT_to_PETMean
Freesurfer Anat To Meshes Transformation
Freesurfer Scanner To MNI Transformation
Histology slice to reference transformation
Mean Functional Volume To Anatomy Transformation
P:Atlas To Subject Affine Transformation
P:Raw to Aligned AC-PC Transformation
P:Subject to Talairach-AC/PC-Anatomist Transformation
P:Subject to Talairach-MNI template-SPM Transformation
P:Subject To Template Affine Transformation
P:Template To Subject Affine Transformation
Photo image to reference transformation
Raw MP2RAGE to PET transformation file
Raw T1 MRI to PET transformation file
Raw T1 to Global SPAM transformation
RECAL Transformation matrix
REF to TEST Transformation matrix
Resample Volume To Talairach
SPECT subject CT to PET transformation file
Subject To Template Transformation
Sulci Global to Local SPAM transformation
Sulci Talairach to Global SPAM transformation
T1MRI to PET transformation file
Talairach To Subject Transformation
Template Pole To Talairach Tranformation
TEST to REF Transformation matrix
Text file
Transform AC/PC T2 Diffusion MR to Extended AC/PC T2 Diffusion MR
Transform DARTEL Common Space to Talairach-AC/PC-Anatomist
Transform DARTEL Input Space to Talairach-AC/PC-Anatomist
Transform DISCO Common Space to Talairach-AC/PC-Anatomist
Transform DISCO Subject Space to DISCO Common Space
Transform Graph to Talairach-AC/PC-Anatomist
Transform Raw T1 MRI to AC/PC T2 Diffusion MR
Transform Raw T1 MRI to Extended AC/PC T2 Diffusion MR
Transform Raw T1 MRI to Raw T1 MRI
Transform Raw T1 MRI to T2 Diffusion MR
Transform Raw T1 MRI to Talairach-AC/PC-Anatomist
Transform Raw T1 MRI to Talairach-MNI template-SPM
Transform Softmean to MNI
Transform T2 Diffusion MR to AC/PC T2 Diffusion MR
Transform T2 Diffusion MR to Extended AC/PC T2 Diffusion MR
Transform T2 Diffusion MR to Raw T1 MRI
Transformation
Transformation matrix
Transformation to Scanner Based Referential